Ok so we got that bandwidth problem under control for now. I started testing JavaGenes. My first attempt running a Java Application did not work. So then I decided to read the BOINC trac documents and try creating a windows launcher using JSmooth. Our projects version 5.11 of JavaGenes worked for a test example that uses a specific class. This Java App has many classes to choose from and I would really like to figure out how I can dynamically choose classes at run-time instead of creating a launcher that uses a specific main class. This may be something obvious that I do not fully comprehend yet. Furthermore, I still need to learn how to write a parameter file for JavaGenes. Our purpose for using JavaGenes is to automatically generate molecular force field parameters for molecular dynamics simulations. My intent is to have an interface where you can enter a substrate and products for a reaction. The project will initiate a serries of workunits that will create input for another serries of workunits. After a all this work is done, we will have candidate enzymes for a reaction.
-Jack